Showcase of Our Recent Papers
A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis

Plewka et al. 2018

RNA Biology
tRex - a Web Portal for Exploration of tRNA-derived Fragments in Arabidopsis thaliana

Thompson et al. 2018

Plant Cell Physiol
Alignment-free sequence comparison: benefits, applications, and tools

Zielezinski et al. 2017

Genome Biology
Efficiency of PacBio long read correction by 2nd generation Illumina sequencing

Mahmoud et al. 2017

Dual Role of the Histone Variant H2A.Z in Transcriptional Regulation of Stress-Response Genes

Sure et al. 2017

Plant Cell
Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3' end of tRNA precursors

Foretek et al. 2017

RNAcentral: a comprehensive database of non-coding RNA sequences

The RNAcentral Consortium

Nucleic Acids Res 2017
Identification and Analysis of WG/GW ARGONAUTE-Binding Domains.

Zielezinski & Karlowski

Methods Mol Biol 2017
ORCAN—a web-based meta-server for real-time detection and functional annotation of orthologs

Zielezinski et al.

Bioinformatics 2017
Nicotine affects protein complex rearrangement in Caenorhabditis elegans cells

Sobkowiak et al.

Drug Chem Toxicol 2017
5SRNAdb: an information resource for 5S ribosomal RNAs.

Szymanski et al.

Nucleic Acids Res 2016
Emerging applications of riboswitches - from antibacterial targets to molecular tools.

Machtel et al.

J Appl Genet 2016
Suitability of high-throughput DMS-probing data for constraining the secondary structure prediction of small RNAs

Plucinska et al.

BioTechnologia 2016
Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3' end of tRNA precursors.

Foretek et al.

Gene 2016
The widespread occurrence of tRNA-derived fragments in Saccharomyces cerevisiae

Bakowska-Zywicka et al.

FEBS openbio 2016
Expression of miRNAs involved in phosphate homeostasis and senescence is altered in glyphosate-treated maize.

Zywicki et al.

Acta Physiol Plant 2015
mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs.

Zielezinski et al.

BMC Plant Biol 2015
Early origin and adaptive evolution of the GW182 protein family, the key component of RNA silencing in animals

Zielezinski & Karlowski

RNA Biol 2015
mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs.

Zielezinski et al.

BMC Plant Biol
Comprehensive analysis of microRNA expression profile in malignant glioma tissues

Piwecka et al.

Mol Oncol 2015
Integrative data analysis indicates an intrinsic disordered domain character of Argonaute-binding motifs

Zielezinski & Karlowski

Bioinformatics 2015
mirEX: a platform for comparative exploration of plant pri-miRNA expression data

Bielewicz et al.

Nucleic Acids Res 2012
Agos—a universal web tool for GW Argonaute-binding domain prediction

Zielezinski & Karlowski

Bioinformatics 2011
Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis

Karlowski et al.

Nucleic Acids Res 2010
Comparative Analysis of the Receptor-Like Kinase Family in Arabidopsis and Rice

Shiu et al.

Plant Cell 2004
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors

Schrick et al.

Genome Biol 2004
Sequence composition and genome organization of maize transcription factors

Messing et al.

PNAS 2004
Novel genes specifically expressed during the development of the male thalli and antheridia in the dioecious liverwort Pellia endiviifolia

Sierocka et al.

Gene 2011
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

Lacombe et al.

BMC Plant Biol 2008
Beyond sequence similarity – the curious case of GW/WG protein domain


BioTechnologia 2011
Copy number variation of microRNA genes in the human genome

Marcinkowska et al.

BMC Genomics 2011
Non-canonical processing of Arabidopsis pri-miR319a/b/c generates additional microRNAs to target one RAP2.12 mRNA isoform

Sobkowiak et al.

Front Plant Sci 2012
Analysis of OPCRIT results indicate the presence of a novel ‘social functioning’ domain and complex structure of other dimensions in the Wielkopolska (Poland) population

Maciukiewicz et al.

Schizophr Res 2012
NERD, a Plant-Specific GW Protein, Defines an Additional RNAi-Dependent Chromatin-Based Pathway in Arabidopsis

Pontier et al.

Mol Cell 2012
The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants

Alaba et al.

New Phytol 2015
The Plant S1-Like Nuclease Family Has Evolved a Highly Diverse Range of Catalytic Capabilities

Lesniewicz et al.

Plant Cell Physiol 2013
Complex Regulation of Two Target Genes Encoding SPX-MFS Proteins by Rice miR827 in Response to Phosphate Starvation

Lin et al.

Plant Cell Physiol 2010
An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome

Pricher et al.

Mol Cell 2014
Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana

Sullivan et al.

Cell Reports 2014
tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii

Gebetsberger et al.

Archaea 2012
Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation

Skreka et al.

Nucleic Acids Res 2012
Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis

Zywicki et al.

Nucleic Acids Res 2012
The role of the universally conserved A2450–C2063 base pair in the ribosomal peptidyl transferase center

Chirkova et al.

Nucleic Acids Res 2010
Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray

Skreka et al.

J Nucleic Acids 2012
Transcriptionally and post-transcriptionally regulated microRNAs in heat stress response in barley

Kruszka et al.

J Exp Bot 2014
Remnants of the Legume Ancestral Genome Preserved in Gene-Rich Regions: Insights from Lupinus angustifolius Physical, Genetic, and Comparative Mapping

Ksiazkiewicz et al.

Plant Mol Biol Report 2015
Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics

Ksiazkiewicz et al.

BMC Genomics 2013
Developmentally regulated expression and complex processing of barley pri-microRNAs

Kruszka et al.

BMC Genomics 2013