Expression
Switch to: Actin
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 29.39 | 5.53 | 2.16e-2 | -1.67 | 5.45 | 2.29e-2 | -1.64 |
2 | 1.000 | 33.13 | 5.15 | 2.81e-2 | -1.55 | 5.29 | 2.56e-2 | -1.59 | |
3 | 1.000 | 28.99 | 4.72 | 3.80e-2 | -1.42 | 3.95 | 6.48e-2 | -1.19 | |
10day-seedling | 1 | 1.000 | 16.4 | 3.54 | 8.58e-2 | -1.07 | -1.95 | 3.87e+0 | 0.59 |
2 | 1.000 | 17.37 | 4.12 | 5.74e-2 | -1.24 | -1.69 | 3.23e+0 | 0.51 | |
3 | 1.000 | 15.95 | 4.58 | 4.18e-2 | -1.38 | -2.13 | 4.38e+0 | 0.64 | |
14day-seedling | 1 | 0.999 | 15.93 | 2.36 | 1.95e-1 | -0.71 | -4.29 | 1.95e+1 | 1.29 |
2 | 0.995 | 17.9 | -0.21 | 1.16e+0 | 0.06 | -3.12 | 8.69e+0 | 0.94 | |
3 | 0.993 | 16.58 | -1.21 | 2.31e+0 | 0.36 | -3.35 | 1.02e+1 | 1.01 | |
25day-aerial | 1 | 0.996 | 13.94 | 1.08 | 4.73e-1 | -0.33 | -4.68 | 2.56e+1 | 1.41 |
2 | 0.997 | 15.2 | 1.16 | 4.49e-1 | -0.35 | -5.09 | 3.40e+1 | 1.53 | |
3 | 0.999 | 14.81 | 0.93 | 5.25e-1 | -0.28 | -4.63 | 2.48e+1 | 1.4 | |
35day-aerial | 1 | 1.000 | 14.5 | 0.04 | 9.73e-1 | -0.01 | -5.5 | 4.52e+1 | 1.65 |
2 | 1.000 | 15.5 | 2.78 | 1.46e-1 | -0.84 | -3.35 | 1.02e+1 | 1.01 | |
3 | 0.992 | 13.45 | 0.26 | 8.34e-1 | -0.08 | -5.93 | 6.08e+1 | 1.78 | |
42day-rosette | 1 | 0.997 | 15.78 | 2.25 | 2.11e-1 | -0.68 | -4.86 | 2.90e+1 | 1.46 |
2 | 1.000 | 17.73 | 3.35 | 9.81e-2 | -1.01 | -2.34 | 5.07e+0 | 0.71 | |
3 | 1.000 | 14.62 | 1.1 | 4.68e-1 | -0.33 | -4.47 | 2.22e+1 | 1.35 | |
42day-stem | 1 | 0.999 | 16.6 | 4.91 | 3.32e-1 | -1.48 | -0.4 | 1.32e+0 | 0.12 |
2 | 1.000 | 16.83 | 4.29 | 5.12e-1 | -1.3 | -1.27 | 2.40e+0 | 0.38 | |
3 | 1.000 | 16.88 | 3.51 | 8.84e-1 | -1.54 | -2.86 | 6.99e+0 | 0.84 | |
53day-rosette | 1 | 1.000 | 15.61 | 1.56 | 3.38e-1 | -0.47 | -4.42 | 2.15e+1 | 1.33 |
2 | 1.000 | 15.26 | 2.97 | 1.28e-1 | -0.89 | -2.75 | 6.72e+0 | 0.83 | |
3 | 1.000 | 16.61 | 3.72 | 7.57e-2 | -1.12 | -2.93 | 7.64e+0 | 0.88 | |
53day-stem | 1 | 0.999 | 18.57 | 5.14 | 2.83e-2 | -1.55 | -1.37 | 2.59e+0 | 0.41 |
2 | 1.000 | 19.29 | 4.51 | 4.38e-2 | -1.36 | -0.14 | 1.10e+0 | 0.04 | |
3 | 1.000 | 20.51 | 2.9 | 1.34e-1 | -0.87 | -0.05 | 1.04e+0 | 0.02 | |
53day-inflores | 1 | 0.999 | 18.93 | 5.54 | 2.15e-2 | -1.67 | 0.38 | 7.67e-1 | -0.12 |
2 | 1.000 | 20.78 | 6.15 | 1.41e-2 | -1.85 | 1.59 | 3.31e-1 | -0.48 | |
3 | 1.000 | 19.71 | 5.88 | 1.69e-2 | -1.77 | 1.29 | 4.08e-1 | -0.39 | |
53day-silique | 1 | 1.000 | 29.75 | 9.9 | 1.05e-3 | -2.98 | 5.95 | 1.62e-2 | -1.79 |
2 | 1.000 | 29.02 | 9.73 | 1.18e-3 | -2.93 | 6.03 | 1.53e-2 | -1.81 | |
3 | 1.000 | 30.23 | 11.26 | 4.09e-4 | -3.39 | 7.52 | 5.43e-3 | -2.27 |
NGS expression data
Expression of miR863 transcript in NGS dataSequences
miRNA transcript
GAGACCAACAGCUACGUAUUAGAGGAUUUCGACCUGACCAGAAGGAGUUAACCUACAAAGUUAAUUCUCAGAUAUUCUUGACUCAUAAGAUGUAGAAACUAGAGAAGAGUUUGGGGGAAAACUCUUUCUUAUGUCUUGUUGAUCUCAAUAGCAUUGAUACAAUGUAUAUAUAUGCAAUUUAGAAUAUGUUUUUCCUAAUUUGAAUAAGAAAUAGAUAAACAUGAAUAAGUAUAUAUAUAUUUCCUAUUUAGAAUAUUUAUUUAUUCAAAUUAGGUGAAACAUAAUCUAGGUUGUAUAUAUAUAUGUUAUACCAAUGCGAUUGAGAGCAACAAGACAUAAUAAAGAGUUUUCGAAAACUUUUUUCUAGUUUCUACAUAAGAGGAG
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
AGACCAACAGCTACGTATTAGAGGATTT | primer | 5p | 2 | 29 |
GTTTTCCCCCAAACTCTTCTCTAGTT | primer | 3p | 97 | 122 |
UUAUGUCUUGUUGAUCUCAAU | sRNA | 5p | 129 | 149 |
UUGAGAGCAACAAGACAUAAU | sRNA | 3p | 320 | 340 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
ASRP | ASRP record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR863 found in PubMed |