miR395e
DB statistics:
  • Saturday, March 2nd 2024:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

Download CSV Table

Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.653480.4709173.725990.3936
10day-seedling1.532030.5096593.340180.369503
14day-seedling2.2237204.223430
25day-aerial1.050390.01890682.571030.198967
35day-aerial0.774980.8015862.826430.609423
42day-rosette0.736690.9116222.758360.670686
42day-stem1.430010.1860673.14660.314703
53day-rosette1.221240.7566913.063750.616513
53day-stem2.789331.254934.232870.856902
53day-inflores1.69220.5319183.230540.482641
53day-silique3.716580.5401274.859170.579549
Raw Expression Data

Download CSV Table

Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00033.339.471.41e-3-2.859.381.50e-3-2.82
21.00039.2811.33.97e-4-3.411.433.62e-4-3.44
31.00036.8512.581.63e-4-3.7911.812.78e-4-3.56
10day-seedling11.00029.116.241.29e-5-4.8910.755.81e-4-3.24
21.00032.0618.812.17e-6-5.66131.22e-4-3.91
31.00030.8119.441.41e-6-5.8512.731.48e-4-3.83
14day-seedling10.99929.4415.871.67e-5-4.789.221.67e-3-2.78
2----N/D--N/D
3----N/D--N/D
25day-aerial1----N/D--N/D
20.99933.7619.721.16e-6-5.9413.488.77e-5-4.06
30.99933.6919.811.09e-6-5.9614.255.15e-5-4.29
35day-aerial11.00034.6720.228.20e-7-6.0914.683.81e-5-4.42
20.99630.4117.694.72e-6-5.3311.563.31e-4-3.48
30.99934.7321.543.28e-7-6.4815.352.39e-5-4.62
42day-rosette11.00036.7923.251.00e-7-716.141.38e-5-4.86
20.99934.4820.18.90e-7-6.0514.414.60e-5-4.34
31.00030.8117.296.25e-6-5.211.722.96e-4-3.53
42day-stem10.99730.6518.961.96e-1-5.7813.657.77e-1-4.2
21.00030.6518.193.54e-1-5.4512.561.66e-1-3.79
31.00031.5718.183.36e-6-5.4711.882.66e-1-3.58
53day-rosette11.00031.8917.844.27e-6-5.3711.852.71e-4-3.57
21.00029.9417.654.85e-6-5.3111.942.55e-4-3.59
31.00034.9922.12.23e-7-6.6515.442.25e-5-4.65
53day-stem11.00029.415.971.55e-5-4.819.451.42e-3-2.85
21.00031.3316.551.04e-5-4.9811.92.62e-4-3.58
30.99826.789.181.73e-3-2.766.221.34e-2-1.87
53day-inflores10.99532.5319.141.73e-6-5.7613.986.18e-5-4.21
20.99931.3816.759.06e-6-5.0412.22.13e-4-3.67
30.99929.5315.71.88e-5-4.7311.114.54e-4-3.34
53day-silique11.00028.78.862.16e-3-2.674.913.33e-2-1.48
21.00030.9611.673.07e-4-3.517.974.00e-3-2.4
31.00031.1712.192.13e-4-3.678.462.83e-3-2.55
NGS expression data
Expression of miR395e transcript in NGS data
Sequences
miRNA transcript
AUAUAUAAAACGCCAGUCCCUCCAUUCUUUUUCAAACCCUAACACUCUUAUAAACCGAUUCGCCAAAAUGUAUCUACAAUAUAUUGAUAAUGUAAUAUCUAUAUAUUCAAACAAUCGUCGUGUUGGUCGGAUGUUUUCUAGAGUUCCUCUGAGCACUUCAUUGGAGAUACAAUUUUUUAUAAAAUAGUUUUCUACUGAAGUGUUUGGGGGAACUCCCGGGCUGAU
Short sequences
sequencetypearmstartend
CUGAAGUGUUUGGGGGAACUC
miRNA195215
ATATATAAAACGCCAGTCCCTCCATT
primer5p126
CATCCGACCAACACGACGAT
primer3p114133

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR395e found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 225 nt
MFE = -63.46 kcal/mol

COMMENTS