miR395d
DB statistics:
  • Monday, April 22nd 2024:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: PP2A

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-9).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed6.739290.9665156.811810.874424
10day-seedling3.398931.112425.207091.07607
14day-seedling3.545360.4359874.519881.38911
25day-aerial3.509150.6095135.318930.528753
35day-aerial3.4710705.333540
42day-rosette3.850890.6975875.742240.392991
42day-stem3.512930.3809645.261470.593138
53day-rosette3.473250.4237325.235030.481843
53day-stem3.759891.428435.203581.26523
53day-inflores3.647360.02358925.00660.456415
53day-silique5.031750.6594816.174350.699873
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00033.219.351.53e-3-2.819.261.63e-3-2.79
21.00031.783.87.17e-2-1.143.946.53e-2-1.18
31.00033.659.381.50e-3-2.828.612.56e-3-2.59
10day-seedling11.00027.7314.873.35e-5-4.479.371.51e-3-2.82
21.00035.522.252.00e-7-6.716.441.12e-5-4.95
31.00030.0718.72.35e-6-5.6311.992.46e-4-3.61
14day-seedling11.00030.0216.451.12e-5-4.959.81.12e-3-2.95
20.99737.0418.932.00e-6-5.716.031.50e-5-4.82
30.99436.7618.971.95e-6-5.7116.838.58e-6-5.07
25day-aerial10.99832.8419.989.64e-7-6.0214.225.22e-5-4.28
20.99531.8317.784.44e-6-5.3511.543.36e-4-3.47
31.00030.3616.481.09e-5-4.9610.925.16e-4-3.29
35day-aerial1----N/D--N/D
2----N/D--N/D
30.99731.5618.372.96e-6-5.5312.182.16e-4-3.67
42day-rosette10.99732.2818.742.28e-6-5.6411.643.14e-4-3.5
2----N/D--N/D
31.00028.9915.472.21e-5-4.669.91.05e-3-2.98
42day-stem10.99930.8119.121.75e-6-5.7613.816.95e-1-4.16
2----N/D--N/D
30.99930.7217.336.59e-6-5.2211.264.80e-1-3.32
53day-rosette11.00031.4117.365.93e-6-5.2311.383.76e-4-3.42
21.00031.6419.351.49e-6-5.8313.647.84e-5-4.11
3----N/D--N/D
53day-stem10.99730.7317.36.18e-6-5.2110.785.67e-4-3.25
20.99736.8522.072.27e-7-6.6417.425.71e-6-5.24
30.99830.1912.591.63e-4-3.799.631.26e-3-2.9
53day-inflores11.00031.1717.784.45e-6-5.3512.621.58e-4-3.8
20.99932.4917.864.20e-6-5.3813.39.88e-5-4.01
30.99830.5516.729.27e-6-5.0312.132.23e-4-3.65
53day-silique11.00030.510.656.21e-4-3.216.79.60e-3-2.02
21.00033.7414.454.47e-5-4.3510.755.83e-4-3.23
31.00033.4214.444.48e-5-4.3510.715.96e-4-3.22
NGS expression data
Expression of miR395d transcript in NGS data
Sequences
miRNA transcript
UUAUGUUCAUGGUGGUAACUAGCAACAACACAAUAAUAAUUCGACUAGAUGUCCUCUAGAGUUCUCCUGAACACUUCAUUGGAAAUUUGUUAUUCAGUAAGCUAACAGUUAAUUCCACUGAAGUGUUUGGGGGAACUCCCGAUGUCAUUUGGUGA
Short sequences
sequencetypearmstartend
CUGAAGUGUUUGGGGGAACUC
miRNA118138
TTATGTTCATGGTGGTAACTAGCAA
primer5p125
TCACCAAATGACATCGGGAGTTCC
primer3p132155

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR395d found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 155 nt
MFE = -55.70 kcal/mol

COMMENTS