Expression
Switch to: Actin
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 31.09 | 7.23 | 6.66e-3 | -2.18 | 7.14 | 7.07e-3 | -2.15 |
2 | 1.000 | 38.72 | 10.74 | 5.84e-4 | -3.23 | 10.88 | 5.32e-4 | -3.27 | |
3 | 1.000 | 34.67 | 10.39 | 7.43e-4 | -3.13 | 9.63 | 1.27e-3 | -2.9 | |
10day-seedling | 1 | 1.000 | 38.69 | 25.83 | 1.68e-8 | -7.77 | 20.33 | 7.57e-7 | -6.12 |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | 1.000 | 34.79 | 23.42 | 8.89e-8 | -7.05 | 16.71 | 9.33e-6 | -5.03 | |
14day-seedling | 1 | 1.000 | 27.71 | 14.13 | 5.56e-5 | -4.25 | 7.49 | 5.57e-3 | -2.25 |
2 | 0.998 | 31.61 | 13.5 | 8.63e-5 | -4.06 | 10.6 | 6.47e-4 | -3.19 | |
3 | - | - | - | - | N/D | - | - | N/D | |
25day-aerial | 1 | - | - | - | - | N/D | - | - | N/D |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | - | - | - | - | N/D | - | - | N/D | |
35day-aerial | 1 | - | - | - | - | N/D | - | - | N/D |
2 | 0.999 | 32.72 | 20 | 9.54e-7 | -6.02 | 13.87 | 6.69e-5 | -4.17 | |
3 | - | - | - | - | N/D | - | - | N/D | |
42day-rosette | 1 | 0.998 | 33.02 | 19.48 | 1.37e-6 | -5.86 | 12.37 | 1.89e-4 | -3.72 |
2 | 1.000 | 37.94 | 23.56 | 8.10e-8 | -7.09 | 17.87 | 4.19e-6 | -5.38 | |
3 | - | - | - | - | N/D | - | - | N/D | |
42day-stem | 1 | 1.000 | 29.43 | 17.74 | 4.56e-6 | -5.34 | 12.43 | 1.89e-1 | -3.74 |
2 | 0.999 | 31.33 | 18.79 | 2.24e-1 | -5.66 | 13.24 | 1.32e-1 | -3.99 | |
3 | 1.000 | 31.58 | 18.2 | 3.33e-6 | -5.48 | 11.89 | 2.64e-1 | -3.58 | |
53day-rosette | 1 | 1.000 | 5.79 | -8.26 | 3.07e+2 | 2.49 | -14.25 | 1.95e+4 | 4.29 |
2 | 1.000 | 33.73 | 21.44 | 3.50e-7 | -6.46 | 15.73 | 1.84e-5 | -4.73 | |
3 | 1.000 | 35.92 | 23.03 | 1.17e-7 | -6.93 | 16.37 | 1.18e-5 | -4.93 | |
53day-stem | 1 | 0.000 | 39.08 | 25.66 | 1.89e-8 | -7.72 | 19.14 | 1.73e-6 | -5.76 |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | 0.996 | 35.65 | 18.04 | 3.71e-6 | -5.43 | 15.09 | 2.87e-5 | -4.54 | |
53day-inflores | 1 | 0.999 | 28.41 | 15.02 | 3.02e-5 | -4.52 | 9.86 | 1.07e-3 | -2.97 |
2 | 1.000 | 28.46 | 13.83 | 6.85e-5 | -4.16 | 9.28 | 1.61e-3 | -2.79 | |
3 | 0.996 | 26.94 | 13.11 | 1.13e-4 | -3.95 | 8.52 | 2.72e-3 | -2.57 | |
53day-silique | 1 | 1.000 | 28.56 | 8.72 | 2.38e-3 | -2.62 | 4.77 | 3.67e-2 | -1.43 |
2 | 1.000 | 31.97 | 12.68 | 1.52e-4 | -3.82 | 8.98 | 1.99e-3 | -2.7 | |
3 | 1.000 | 32.74 | 13.76 | 7.19e-5 | -4.14 | 10.03 | 9.55e-4 | -3.02 |
NGS expression data
Expression of miR1887 transcript in NGS dataSequences
miRNA transcript
UUGUUCACUUAGAUUGUUCUUAGUAUGAGGUGUUCUCGUACUAAGUAGAGUCUAAGAGAACAAGAUCAUUUUAUAUUUUAAUUUACACAAAAGUCAUAAGAUCCGUUGGUUCUUUUU
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
UACUAAGUAGAGUCUAAGAGA | miRNA | 39 | 59 | |
TTGTTCTTAGTATGAGGTGTTCTCG | primer | 5p | 14 | 38 |
AAAAGAACCAACGGATCTTATGAC | primer | 3p | 93 | 116 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
PMRD | PMRD record |
PubMed Entrez | The most up-to-date article(s) about miR1887 found in PubMed |