Software

Databases & Software We Develop

Databases:

5SRNAdb: an information resource for 5S ribosomal RNAs.

5S rRNA DB

Archaea, Bacteria, Eukaryota
Platform for comparative exploration of Arabidopsis pri-miRNA expression data

mirEX 1.0

miRNA, pre-miRNA, Arabidopsis
Integrated environment for expression profiling of plant microRNAs

mirEX 2.0

NGS, Pellia, Hordeum, Arabidopsis

Web applications:

Alignment-free WG/GW AGO-binding site identification

AGOS

WG/GW, Argonaute, domain
PSSM-based identification of short functional W(Trp)-containing motifs

Wsearch

W-motif, domain
Random Forest-based identification of short functional W(Trp)-containing motifs

i-Wsearch

W-motif, machine learning
Real-time identification and functional annotation of orthologs

ORCAN

orthologs, homology, sequence

Web portals:

Whub is a resource to study functional Trp(W)-containing motifs in animal, plant and viral protein

Whub

WG/GW, Argonaute, CCR4-NOT