miR395c
DB statistics:
  • Monday, April 22nd 2024:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.747350.5165853.819860.403414
10day-seedling2.959060.7349324.767210.544991
14day-seedling3.033310.4059373.994911.08777
25day-aerial2.942011.197164.715431.21386
35day-aerial3.217940.4281975.012150.348797
42day-rosette3.053260.7267544.89570.594871
42day-stem2.691920.3518644.373930.427941
53day-rosette3.521950.4160175.364450.280176
53day-stem2.588420.9225854.272830.77146
53day-inflores2.772880.401414.005490.628181
53day-silique4.200430.2834955.343020.312516
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00035.1911.343.87e-4-3.4111.254.11e-4-3.39
21.00036.868.892.11e-3-2.689.021.93e-3-2.72
31.00036.4712.192.14e-4-3.6711.423.64e-4-3.44
10day-seedling11.00024.2111.353.84e-4-3.425.851.73e-2-1.76
21.00026.0612.811.39e-4-3.8677.83e-3-2.11
31.00027.4816.111.41e-5-4.859.41.48e-3-2.83
14day-seedling10.99926.0312.461.77e-4-3.755.821.77e-2-1.75
20.99532.8414.733.67e-5-4.4311.832.75e-4-3.56
30.98830.1312.341.93e-4-3.7110.28.52e-4-3.07
25day-aerial10.99530.8117.953.95e-6-5.412.192.14e-4-3.67
20.99624.9910.945.07e-4-3.294.73.84e-2-1.42
30.99825.3111.433.62e-4-3.445.871.71e-2-1.77
35day-aerial10.99425.6411.184.30e-4-3.375.652.00e-2-1.7
21.00026.7514.026.00e-5-4.227.894.21e-3-2.38
31.00025.6512.461.78e-4-3.756.271.29e-2-1.89
42day-rosette11.00028.2814.753.64e-5-4.447.645.01e-3-2.3
20.99828.6314.255.14e-5-4.298.562.65e-3-2.58
31.00023.8610.347.73e-4-3.114.773.66e-2-1.44
42day-stem10.99926.3914.723.75e-1-4.439.391.49e-1-2.83
20.99827.7815.232.59e-1-4.599.691.21e-1-2.92
30.99826.38131.22e-1-3.916.699.69e-1-2.13
53day-rosette11.00024.7810.745.87e-4-3.234.753.73e-2-1.43
21.00023.0610.785.70e-4-3.245.063.00e-2-1.52
31.00026.0413.151.10e-4-3.966.491.11e-2-1.95
53day-stem11.0002713.588.16e-5-4.097.067.49e-3-2.13
21.00031.3816.61.01e-5-511.952.53e-4-3.6
31.00028.7311.124.49e-4-3.358.173.48e-3-2.46
53day-inflores10.99728.7415.342.40e-5-4.6210.198.56e-4-3.07
20.99928.7314.15.68e-5-4.259.551.34e-3-2.87
30.99626.5112.681.52e-4-3.828.093.67e-3-2.44
53day-silique11.00028.498.652.50e-3-2.64.73.86e-2-1.41
21.00029.6710.387.51e-4-3.126.679.79e-3-2.01
31.00027.858.882.13e-3-2.675.142.83e-2-1.55
NGS expression data
Expression of miR395c transcript in NGS data
Sequences
miRNA transcript
UCAUGACAGAGCAAGAAGAAGAAAGUCAAAUGUCCACAUGAGUUCCCUUUAACGCUUCAUUGUUGAAUACUCAAAGCCACAUUGGUUUGUAUAUAACACUGAAGUGUUUGGGGGGACUCUUGGUGUCAUUCUGGCGUUGAAGUGGCCACCAUUGCUGCGGUUUUCUAU
Short sequences
sequencetypearmstartend
CUGAAGUGUUUGGGGGGACUC
miRNA99119
TCATGACAGAGCAAGAAGAAGAA
primer5p123
ATAGAAAACCGCAGCAATGG
primer3p149168

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR395c found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 168 nt
MFE = -58.60 kcal/mol

COMMENTS