miR395b
DB statistics:
  • Saturday, March 2nd 2024:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

Download CSV Table

Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.141390.8671034.27031.01237
10day-seedling2.97130.768424.779460.588492
14day-seedling3.635010.4396014.830130.283382
25day-aerial3.395330.2743375.159330.308392
35day-aerial3.178330.5610824.972190.477361
42day-rosette3.143250.7550164.984770.657782
42day-stem2.570850.5009924.276840.521968
53day-rosette3.731960.4420795.574460.310133
53day-stem2.771310.9023814.188960.990081
53day-inflores2.531020.2631813.985740.196515
53day-silique2.972921.107864.115511.14512
Raw Expression Data

Download CSV Table

Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00035.3911.533.37e-4-3.4711.453.58e-4-3.45
2----N/D--N/D
31.00031.737.465.68e-3-2.256.699.69e-3-2.01
10day-seedling11.00023.6610.85.60e-4-3.255.312.52e-2-1.6
21.00026.6913.448.99e-5-4.057.635.06e-3-2.3
31.00027.2815.911.63e-5-4.799.191.71e-3-2.77
14day-seedling11.00026.3412.771.44e-4-3.846.121.44e-2-1.84
20.99928.7710.656.20e-4-3.217.754.65e-3-2.33
31.00027.689.891.05e-3-2.987.754.64e-3-2.33
25day-aerial10.99925.8813.021.20e-4-3.927.266.52e-3-2.19
20.99825.5711.533.38e-4-3.475.292.56e-2-1.59
31.00025.2211.343.84e-4-3.425.781.82e-2-1.74
35day-aerial10.99925.2510.85.61e-4-3.255.262.61e-2-1.58
20.99927.2714.554.18e-5-4.388.412.93e-3-2.53
30.99225.9112.721.48e-4-3.836.531.08e-2-1.97
42day-rosette10.99927.6714.135.59e-5-4.257.027.70e-3-2.11
21.00028.7714.394.66e-5-4.338.72.41e-3-2.62
31.00023.449.921.03e-3-2.994.354.90e-2-1.31
42day-stem10.99726.6114.923.23e-1-4.499.71.28e-1-2.89
20.99928.5215.981.55e-1-4.91.437.26e-1-3.14
31.00026.3412.961.26e-1-3.96.659.97e-1-2.14
53day-rosette11.00023.959.91.05e-3-2.983.916.65e-2-1.18
21.00022.4110.128.97e-4-3.054.414.71e-2-1.33
31.00025.4412.551.67e-4-3.785.891.69e-2-1.77
53day-stem11.00026.2212.81.41e-4-3.856.281.29e-2-1.89
20.99932.2417.475.52e-6-5.2612.821.39e-4-3.86
31.00029.4811.882.66e-4-3.588.922.06e-3-2.69
53day-inflores10.99928.8815.492.18e-5-4.6610.337.75e-4-3.11
20.99829.614.973.11e-5-4.5110.427.31e-4-3.14
31.00027.6813.856.77e-5-4.179.261.63e-3-2.79
53day-silique11.00029.539.681.22e-3-2.915.731.88e-2-1.73
21.00036.3317.047.41e-6-5.1313.349.66e-5-4.02
31.00032.3813.419.20e-5-4.049.681.22e-3-2.91
NGS expression data
Expression of miR395b transcript in NGS data
Sequences
miRNA transcript
AUGUCCCCAUGAGUUCCCUUUAACGCUUCAUUGUUAAAUACUCAAAGCCACAUUGGUUUGUAUACAACACUGAAGUGUUUGGGGGGACUCUUGGUGUCAUUCUGGCGUAGUGACCACCAUUGCAGCC
Short sequences
sequencetypearmstartend
CUGAAGUGUUUGGGGGGACUC
miRNA7090
TCCCCATGAGTTCCCTTTAACG
primer5p425
GGCTGCAATGGTGGTCACTAC
primer3p107127

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR395b found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 127 nt
MFE = -53.00 kcal/mol

COMMENTS