Expression
Switch to: Actin
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 30.67 | 6.81 | 8.91e-3 | -2.05 | 6.72 | 9.46e-3 | -2.02 |
2 | 1.000 | 35.05 | 7.08 | 7.41e-3 | -2.13 | 7.21 | 6.75e-3 | -2.17 | |
3 | 1.000 | 26.48 | 2.21 | 2.16e-1 | -0.67 | 1.44 | 3.69e-1 | -0.43 | |
10day-seedling | 1 | 1.000 | 18.88 | 6.02 | 1.54e-2 | -1.81 | 0.53 | 6.92e-1 | -0.16 |
2 | 1.000 | 21.14 | 7.89 | 4.22e-3 | -2.37 | 2.08 | 2.37e-1 | -0.62 | |
3 | 1.000 | 17.74 | 6.37 | 1.21e-2 | -1.92 | -0.34 | 1.27e+0 | 0.1 | |
14day-seedling | 1 | 0.999 | 22.17 | 8.6 | 2.57e-3 | -2.59 | 1.96 | 2.57e-1 | -0.59 |
2 | 0.989 | 23.81 | 5.7 | 1.93e-2 | -1.71 | 2.79 | 1.44e-1 | -0.84 | |
3 | 0.998 | 21.86 | 4.07 | 5.97e-2 | -1.22 | 1.93 | 2.63e-1 | -0.58 | |
25day-aerial | 1 | 0.999 | 17.84 | 4.99 | 3.15e-2 | -1.5 | -0.77 | 1.71e+0 | 0.23 |
2 | 0.990 | 26.41 | 12.37 | 1.89e-4 | -3.72 | 6.13 | 1.43e-2 | -1.84 | |
3 | 1.000 | 19.66 | 5.78 | 1.82e-2 | -1.74 | 0.22 | 8.60e-1 | -0.07 | |
35day-aerial | 1 | 0.996 | 19.14 | 4.68 | 3.90e-2 | -1.41 | -0.86 | 1.81e+0 | 0.26 |
2 | 0.998 | 21.14 | 8.41 | 2.93e-3 | -2.53 | 2.28 | 2.06e-1 | -0.69 | |
3 | 0.989 | 18.25 | 5.06 | 3.01e-2 | -1.52 | -1.13 | 2.19e+0 | 0.34 | |
42day-rosette | 1 | 0.996 | 17.12 | 3.58 | 8.33e-2 | -1.08 | -3.52 | 1.15e+1 | 1.06 |
2 | 1.000 | 19.4 | 5.02 | 3.08e-2 | -1.51 | -0.67 | 1.59e+0 | 0.2 | |
3 | 0.999 | 17.12 | 3.6 | 8.26e-2 | -1.08 | -1.97 | 3.92e+0 | 0.59 | |
42day-stem | 1 | 0.999 | 15.68 | 3.99 | 6.34e-1 | -1.24 | -1.32 | 2.59e+0 | 0.4 |
2 | 1.000 | 18.38 | 5.84 | 1.75e-1 | -1.76 | 0.29 | 8.18e-1 | -0.87 | |
3 | 0.999 | 16.66 | 3.28 | 1.32e-1 | -0.99 | -3.35 | 8.17e+0 | 0.91 | |
53day-rosette | 1 | 1.000 | 16.43 | 2.38 | 1.92e-1 | -0.72 | -3.61 | 1.22e+1 | 1.09 |
2 | 1.000 | 15.49 | 3.2 | 1.09e-1 | -0.96 | -2.52 | 5.72e+0 | 0.76 | |
3 | 1.000 | 17.96 | 5.07 | 2.97e-2 | -1.53 | -1.59 | 3.00e+0 | 0.48 | |
53day-stem | 1 | 0.997 | 16.58 | 3.16 | 1.12e-1 | -0.95 | -3.36 | 1.03e+1 | 1.01 |
2 | 0.998 | 18.57 | 3.8 | 7.19e-2 | -1.14 | -0.86 | 1.81e+0 | 0.26 | |
3 | 0.998 | 20.96 | 3.35 | 9.80e-2 | -1.01 | 0.4 | 7.59e-1 | -0.12 | |
53day-inflores | 1 | 0.996 | 15.6 | 2.2 | 2.17e-1 | -0.66 | -2.95 | 7.72e+0 | 0.89 |
2 | 1.000 | 19.97 | 5.34 | 2.46e-2 | -1.61 | 0.79 | 5.80e-1 | -0.24 | |
3 | 0.998 | 19.22 | 5.4 | 2.38e-2 | -1.62 | 0.81 | 5.72e-1 | -0.24 | |
53day-silique | 1 | 1.000 | 26.5 | 6.66 | 9.90e-3 | -2 | 2.71 | 1.53e-1 | -0.82 |
2 | 1.000 | 22.9 | 3.61 | 8.18e-2 | -1.09 | -0.09 | 1.07e+0 | 0.03 | |
3 | 1.000 | 25.67 | 6.7 | 9.65e-3 | -2.02 | 2.96 | 1.28e-1 | -0.89 |
Nothern hybridization
NGS expression data
Expression of miR163 transcript in NGS dataSequences
miRNA transcript
AAGUACCUUAGAUAAACCGACCAAAACCCGGUGGAUAAAAUCGAGUUCCAACCUCUUCAACGACAACGAUUUCAACACUCUCUUCCAGGAACAACUUCCUCCAGGCAGAUGAUACUAAAGUGCUGGAGUUCCCGGUUCCUGAGAGUGAGUCCAUAUCAAAAUGCGCAUUCGUUAUCACUUGGUUGAACCCAUUUGGGGAUUUAAAUUUGGAGGUGAAAUGGAACGCGUAAUUGAUGACUCCUACGUGGAACCUCUUCUUAGGAAGAGCACGGUCGAAGAAGUAACUGCGCAGUGCUUAAAUCGUAGAUGCUAAAGUCGUUGAAGAGGACUUGGAACUUCGAUAUUAUCCCCCGUGU
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
UUGAAGAGGACUUGGAACUUCGAU | miRNA | 319 | 342 | |
AGTACCTTAGATAAACCGACCAAAACC | primer | 5p | 2 | 28 |
AACCGGGAACTCCAGCACTT | primer | 3p | 118 | 137 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
ASRP | ASRP record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR163 found in PubMed |