>HIV1_EL
-ADNLWVTVYYGVPVWKEATTTLFCASDAKSYETEAHNIWATHACVPTDPNPQEIALENV
TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCSDE-------LRNNGTMG
NNVTT---------------------EEK------GMKNCSFNVTTVLKDKKQQVYALFY
RLDIVPIDNDSSTNS---------TNYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFA
ILKCRDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVIIRSENLTNNAKN
IIAHLNESVKITCARP-YQNTRQR-TPIG--LGQSLYTTR-SRSIIGQAHCNISRAQWSK
TLQQVARKLG--TLL------NKTIIKFKPSSGGDPEITTHSFNCGGEFFYCNTSGLFNS
TWNIS--AWNNITESNNSTNTNITLQCRIKQIIKMVAGR-KAIYAPPIERNILCSSNITG
LLLTRDGG-----INNSTNETFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTRAKRRVV
EREKR----
>HIV1_Z2
--DNLWVTVYYGVPVWKEATTTLFCASDAKSYKTEAHNIWATHACVPTDPNPQEIELENV
TENFNMWRNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCIDE-------VMENVTMK
NNNVT---------------------EEI------RMKNCSFNITTVVRDKTKQVHALFY
RLDIVPIDNDNSTNS---------TNYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFA
ILKCRDKRFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIIIRSENLTNNAKI
IIVQLNESVAINCTRP-YRNIRQR-TSIG--LGQALYTTK-TRSIIGQAYCNISKNEWNK
TLQQVAIKLG--NLL------NKTTIIFKPSSGGDPEITTHSFNCGGEFFYCNTSGLFNS
TWDISKSEWANSTESDDKP---ITLQCRIKQIINMWQGVGKAMYAPPIEGQINCSSNITG
LLLTRDGG-----TNNSSNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVV
EREKR----
>HIV1_Z8
-AEDLWVTVYYGVPVWKEATTTLFCASDAKSYEPEAHNIWATHACVPTDPNPREIEMENV
TENFNMWKNNMVEQMHEDIISLWDQNLKPCVKLTPLCVTLNCTNA-------GGNKTTNG
NNTTN---------------------QEEQMMEKGEMKNCSFNITTVISDKKKQVHALFY
RLDVVPIDDDNSANTS----NTNYTNYRLINCNTSAITQACPKVTFEPIPIHYCAPAGFA
ILKCKDKKFNGTGP-CKKVSTVQCTHGIRPVVSTQLLLNGSLAEEEIIIRSENLTNNVKT
IIVHLNESVEINCTRPDNKITRQS-TPIG--LGQALYTTR-IKGDIRQAYCNISAAAWNK
TLQQVAKKLG--DLL------NQTTIIFKPPAGGDPEITTHSFNCGGEFFYCNTSRLFNS
TWNSS--TWNNDTLNSEGT---IKLPCRIKQIINMWQGVGKAMYAPPIEGLIKCTSNITG
LLLTRDGG-----VNNSTNETFRPGGGDMKDNWRNELYKYKVVRIEPLGIAPTRAKRRVV
EREKR----
>HIV1_C4
--ANLWVTVYYGVPVWKEATTTLFCASDAKAYDTEAHNVWATHACVPTNPNPQEVVLENV
TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDL-------NTNNTTNT
TELSIIV--------------------VWEQRGKGEMRNCSFNITTSIRDKVQREYALFY
KLDVEPIDDNKNT--------TNNTKYRLINCNTSVITQACPKVSFEPIPIHYCTPTGFA
LLKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTNNAKT
IIVQLNVSVEINCTRP-NNHTRKR-VTLG--PGRVWYTTGEILGNIRQAHCNISRAQWNN
TLQQIATTLR--EQF------GNKTIAFNQSSGGDPEIVMHSFNCGGEFFYCNSTQLFNS
AWNVTSNGTWSVTRKQKDTGDIITLPCRIKQIINRWQVVGKAMYALPIKGLIRCSSNITG
LLLTRDGG-----GENQTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_W1
-VEQLWVTVYYGVPVWKEATTTLFCASDAKAYSTEAHKVWATHACVPTNPNPQEVVLENV
TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCIDK-------NITDWENK
TII-----------------------------GGGEVKNCSFNITTSIRDKVHKEYALFY
KLDVVPIKSNNDS--------STYTRYRLIHCNTSVITQACSKVSFEPIPIHYCAPAGFA
ILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTDNAKT
IIVHLNESVEINCTRP-NNNVRRRHIHIG--PGRAFYT-GEIRGNIRQAHCNISRAKWNN
TLKQIVEKLR--EQF------KNKTIVFNHSSGGDPEIVTHSFNCGGEFFYCDSTQLFNS
TWNVTGISTEGNNNTE-ENGDTITLPCRIKQIINMWQGVGKAMYAPPIGGQIRCSSNITG
LLLTRDGG-----NSSSREEIFRPGGGNMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_A2
-TEKLWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLGNV
TENFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCT---------DLGKATNT
NSS------------------------NWKEEIKGEIKNCSFNITTSIRDKIQKENALFR
NLDVVPIDNASTT--------TNYTNYRLIHCNRSVITQACPKVSFEPIPIHYCTPAGFA
ILKCNNKTFNGKGP-CTNVSTVQCTHGIRPIVSTQLLLNGSLAEEEVVIRSDNFTNNAKT
IIVQLNESVAINCTRP-NNNTRKS-IYI--GPGRAFHTTGRIIGDIRKAHCNISRAQWNN
TLEQIVKKLR--EQFG-----NNKTIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNN
TWR----LN-HTEGTK--GNDTIILPCRIKQIINMWQEVGKAMYAPPIGGQISCSSNITG
LLLTRDGGT----NVTNDTEVFRPGGGDMRDNWRSELYKYKVIKIEPLGIAPTKAKRRVV
QREKR----
>HIV1_JR
----LWVTVYYGVPVWKETTTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENV
TEDFNMWKNNMVEQMQEDVINLWDQSLKPCVKLTPLCVTLNCK---------DVN-ATNT
TSS------------------------SEGMMERGEIKNCSFNITKSIRDKVQKEYALFY
KLDVVPIDNK------------NNTKYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFA
ILKCNNKTFNGKGQ-CKNVSTVQCTHGIRPVVSTQLLLNGSLAEEKVVIRSDNFTDNAKT
IIVQLNESVKINCTRP-SNNTRKS-IHI--GPGRAFYTTGEIIGDIRQAHCNISRAQWNN
TLKQIVEKLR--EQF------NNKTIVFTHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNS
TWN----DTEKSSGTE--GNDTIILPCRIKQIINMWQEVGKAMYAPPIKGQIRCSSNITG
LLLTRDGGK----NES-EIEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_BR
-TEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNV
TENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCT---------DLGNATNT
NSSNTNS-S-----------------SGEMMMEKGEIKNCSFNISTSIRGKVQKEYAFFY
KLDIIPIDNDT-------------TSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFA
ILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKT
IIVQLNQSVEINCTRP-NNNTRKS-IRIQRGPGRAFVTIG-KIGNMRQAHCNISRAKWNA
TLKQIASKLR--EQFG-----NNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNS
TWFNSTWSTEGSNNTE--GSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITG
LLLTRDGG-----NNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_H3
-TEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNV
TENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCT---------DLKNDTNT
NSS-----------------------SGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFY
KLDIIPIDNDT-------------TSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFA
ILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKT
IIVQLNTSVEINCTRP-NNNTRKK-IRIQRGPGRAFVTIG-KIGNMRQAHCNISRAKWNA
TLKQIASKLR--EQFG-----NNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNS
TWFNSTWSTEGSNNTE--GSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITG
LLLTRDGG-----NNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_B1
-TEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNV
TENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCT---------DLKNDTNT
NSS-----------------------SGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFY
KLDIIPIDNDT-------------TSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFA
ILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKT
IIVQLNQSVEINCTRP-NNNTRKS-IRIQRGPGRAFVTIG-KIGNMRQAHCNISRAKWNN
TLKQIDSKLR--EQFG-----NNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNS
TWFNSTWSTKGSNNTE--GSDTITLPCRIKQIINMWQEVGKAMYAPPISGQIRCSSNITG
LLLTRDGG-----NSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_RH
-AEDLWVTVYYGVPVWKEATTTLFCASEAKAYKTEVHNVWAKHACVPTDPNPQEVLLENV
TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDA-------NLNGTNVT
SSS------------------------GGTMMENGEIKNCSFQVTTSRRDKTQKKYALFY
KLDVVPIEKGNISPKNNTSNNTSYGNYTLIHCNSSVITQACPKVSFEPIPIHYCTPAGFA
ILKCNDKKFNGTGP-CKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTDNVKT
IIVQLNASVQINCTRP-NNNTRKS-ITK--GPGRVIYATGQIIGDIRKAHCNLSRAQWNN
TLKQVVTKLR--EQF------DNKTIVFTSSSGGDPEIVLHSFNCGGEFFYCNTTQLFNS
TWN----STEGSNNTG--GNDTITLPCRIKQIVNMWQEVGKAMYAPPISGQIKCISNITG
LLLTRDGGE----DTTNTTEIFRLGGGNMRDNWRSELYKYKVVRIEPLGVAPTRAKRRVV
QREKR----
>HIV1_S1
-VEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENV
TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCT---------NLKNATNT
KSS------------------------NWKEMDRGEIKNCSFKVTTSIRNKMQKEYALFY
KLDVVPIDNDNTS-------------YKLINCNTSVITQACPKVSFEPIPIHYCAPAGFA
ILKCNDKKFNGSGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEGVVIRSENFTDNAKT
IIVQLKESVEINCTRP-NNNTRKS-ITI--GPGRAFYATGDIIGDIRQAHCNISGEKWNN
TLKQIVTKLQ--AQF------GNKTIVFKQSSGGDPEIVMHSFNCGGEFFYCNSTQLFNS
TWN----NTIGPNNTN--G--TITLPCRIKQIINRWQEVGKAMYAPPIRGQIRCSSNITG
LLLTRDGGK----EISNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV
QREKR----
>HIV1_MN
-TEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATQACVPTDPNPQEVELVNV
TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCT---------DLRNTTNT
NNSTANNNS-----------------NSEGTIKGGEMKNCSFNITTSIRDKMQKEYALLY
KLDIVSIDNDS-------------TSYRLISCNTSVITQACPKISFEPIPIHYCAPAGFA
ILKCNDKKFSGKGS-CKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTDNAKT
IIVHLNESVQINCTRP-NYNKRKR-IHI--GPGRAFYTTKNIIGTIRQAHCNISRAKWND
TLRQIVSKLK--EQF------KNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTSPLFNS
TWNG---NNTWNNTTG--SNNNITLQCKIKQIINMWQEVGKAMYAPPIEGQIRCSSNITG
LLLTRDGGKD---TDTNDTEIFRPGGGDMRDNWRSELYKYKVVTIEPLGVAPTKAKRRVV
QREKR----
>HIV1_KB
-AEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEVVLVNV
TENFNMWKNNMVEQMHENIISLWDQSLKPCVKLTPLCVTLHCT---------DLRNTTNN
NSS-------------------------IEEKMKGEIKNCSFNVTTNIRDKVQKEYALFY
KLDVVPIDNDNNS---------TNTCYRLISCDTSVITQACPKVSFEPIPIHYCTPAGFA
LLKCNNKTFNGTGP-CKNVSTVQCTHGIRPVVSTQLLLNGSLAEEGVVIRSENFTDNVKT
IIVQLNETVKINCIRP-NNKTRKR-VTM--GPGRVYYTTGEIIGDIRQAHCNISRAEWNK
TLEQIANKLR--KQF------ENKTIVFNQSSGGDPEIVMHNFNCGGEFFYCDSSQLFNS
THL----SNGTWWNGT--GPENITLPCRIKQIVNMWQEVGKAMYAPPIRGQIRCSSNITG
LLLTRDGGNTQNNNTNSSIEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVV
QREKR----
>SIV_CZ
--SELWVTVYYGVPVWHDADPVLFCASDAKAHSTEAHNIWATQACVPTDPSPQEVFLPNV
IESFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLQCSKA-------NFSQAKNL
TNQTS--------------------------SPPLEMKNCSFNVTTELRDKKKQVYSLFY
VEDVVNLGNEN-------------NTYRIINCNTTAITQACPKTSFEPIPIHYCAPAGFA
ILKCNDKDFSGKGK-CTNVSTVHCTHGIKPVVTTQLLINGSLAEGNITVRVENKSKNTDV
WIVQLVEAVSLNCHRP-GNNTRGE-VQIG--PGMTFYNIENVVGDTRSAYCKINGTTWNR
TVEEVKKALA--TSSNR----TAANITLNRASGGDPEVTHHMFNCGGEFFYCNTSQIFT-
-----------DNITN----GIIILPCRIRQIVSSWMRVGRGIYAPPIRGNITCNSNITG
LLLTSDTP----VTNNSGNLTFRPTGGNMKDIWRSELYKYKVVRIEPLSVAPTKARRHTV
ARQKDRQKR
>HIV2_BE
YC-SQYVTVFYGIPAWKNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIILN-V
TEAFDAWNNTVTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSR-----VQGNTTTPNPR
TSSSTTSRPPTSAASIINETSNCIENNTCAGLGYEEMMQCEFNMKGLEQDKKRRYKDTWY
LEDVVC----DNTT-AG--------TCYMRHCNTSIIKESCDKHYWDAMRFRYCAPPGFA
LLRCNDTNYSGFEPKCTKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKYYNLTMRCKRP----GNKTVLPITLMSGLVFHS-QPIN-TRPRQAWCRFGGRWRE
AMQEVKQTLVQHPRYKG-INDTGKINFTKPGAGSDPEVAFMWTNCRGEFLYCNMTWFLNW
VEDK-NQTRR------------NY--CHIKQIINTWHKVGKNVYLPPREGELACESTVTS
IIANIDIDKNR-------THTNITFSAEVAELYRLELGDYKLIEITPIGFAPTDQRR---
---------
>HIV2_D1
YC-KQYVTVFYGIPAWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEITLN-V
TEAFDAWDNTVTEQAIEDVWRLFETSIKPCVKLTPLCVAMNCNI-----TSGTTATPSP-
-----------PNITIIDENSTCIGDNNCTGLGKEEVVECEFNMTGLEQDKKRKYNDAWY
SRDVVC----DKTNGTG--------TCYMRHCNTSVIKESCDKHYWDAMKFRYCAPPGFA
LLRCNDTNYSGFEPKCSKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYWHG-KDNRTI
ISLNKYYNLTMHCKRP----GNKTVVPITLMSGRRFHS-RPVYNKKPGQAWCWFQGNWIE
AMREVKQTLAKHPRYGG-TNDTGKINFTKPGIGSDPEVTYMWTNCRGEFLYCNMTWFLNW
VENKTNQTHG------------NYAPCHIRQIINTWHKVGTNVYLPPREGELTCNSTVTS
IIANIDSDGN---------QTNITFSAEVAELYRLELGDYKLIEVTPIPFAPTKEKRYSS
APVRNKR--
>HIV2_SB
YC-TKYVTVFYGVPVWKNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIPLN-V
TEAFDAWDNIVTEQAVEDVWNLFETSIKPCVKLTPLCVTMNCNAS----TESAVATTSP-
-----------SGPDMINDTDPCIQLNNCSGLREEDMVECQFNMTGLELDKKKQYSETWY
SKDVVCE--SDNSTDRK--------RCYMNHCNTSVITESCDKHYWDAMRFRYCAPPGFV
LLRCNDTNYSGFEPNCSKVVASTCTRMMETQPSTWLGFNGTRAENRTYIYWHG-RDNRTI
ISLNKYYNLTILCRRP----ENKTVVPITLMSGRRFHS-QKIINKKPRQAWCRFKGEWRE
AMQEVKQTLVKHPRYKG-TNDTNKINFTAPEKDSDPEVAYMWTNCRGEFLYCNMTWFLNW
VENKTGQQH-------------NYVPCHIEQIINTWHKVGKNVYLPPREGELSCESTVTS
IIANIDVDGD--------NRTNITFSAEVAELYRLELGDYKLVEVTPIGFAPTAEKR---
---------
>HIV2_S2
YC-VQYVTVFYGVPVWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIALN-V
TEAFDAWNNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMRCN-------STTAKNTTST
PTTTTTAN------TTIGENSSCIRTDNCTGLGEEEMVDCQFNMTGLERDKKKLYNETWY
SKDVVCE-SKDTKKEK---------TCYMNHCNTSVITESCDKHYWDTMRFRYCAPPGFA
LLRCNDTNYSGFEPNCSKVVAATCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKFYNLTILCKRP----GNKTVVPITLMSGLVFHS--QPINRRPRQAWCWFKGEWKE
AMKEVKLTLAKHPRYKG-TNDTEKIRFIAPGERSDPEVAYMWTNCRGEFLYCNMTWFLNW
VENRTNQTQH------------NYVPCHIKQIINTWHKVGKNVYLPPREGQLTCNSTVTS
IIANIDG-GE--------NQTNITFSAEVAELYRLELGDYKLIEVTPIGFAPTSIKR---
---------
>HIV2_ST
YC-VQYVTVFYGVPVWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIALN-V
TEAFDAWNNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMRCN-------STTAKNTTST
PTTTTTAN------TTIGENSSCIRTDNCTGLGEEEMVDCQFNMTGLERDKKKLYNETWY
SKDVVCE-SNDTKKEK---------TCYMNHCNTSVITESCDKHYWDTMRFRYCAPPGFA
LLRCNDTNYSGFEPNCSKVVAATCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKFYNLTVHCKRP----GNKTVVPITLMSGLVFHS--QPINRRPRQAWCWFKGEWKE
AMKEVKLTLAKHPRYKG-TNDTEKIRFIALGERSDPEVAYMWTNCRGEFLYCNMTWFLNW
VENRTNQTQH------------NYVPCHIKQIINTWHKVGKNVYLPPREGQLTCNSTVTS
IIANIDG-GE--------NQTNITFSAEVAELYRLELGDYKLIEVTPIGFAPTPVKR---
---------
>HIV2_G1
YC-TQYVTVFYGVPVWRNASIPLFCATKNR-------DTWGTIQCKPDNDDYQEITLN-V
TEAFDAWDNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMSCN-------STTNNTTT--
-TGSTTGM------SEINETSPSY-SDNCTGLGKEEIVNCQFYMTGLERDKKKQYNETWY
SKDVVCE-SNNTKDGKN--------RCYMNHCNTSVITESCDKHYWDAIKFRYCAPPGYA
LLRCNDTNYSGFEPKCSKVVASTCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKYYNLSIHCKRP----GNKTVVPITLMSGLVFHS--QPINTRPRQAWCWFKGKWRE
AMQEVKQTLIKHPRYKG-TNDTKNINFTKPGRGSDPEVAYMWTNCRGEFLYCNMTWFLNW
VENRPNQTQH------------NYAPCHIRQIINTWHKVGKNVYLPPREGQLTCNSTVTS
IIANIDV-NS--------NQTNITFSAEVAELYRLELGDYKLIEVTPIGFAPTREKR---
---------
>HIV2_RO
YC-TQYVTVFYGVPTWKNATIPLFCATRNR-------DTWGTIQCLPDNDDYQEITLN-V
TEAFDAWNNTVTEQAIEDVWHLFETSIKPCVKLTPLCVAMKCSST----ESSTGNNTTSK
STSTTTTTP-TDQEQEISEDTPCARADNCSGLGEEETINCQFNMTGLERDKKKQYNETWY
SKDVVCE-TNNSTNQT---------QCYMNHCNTSVITESCDKHYWDAIRFRYCAPPGYA
LLRCNDTNYSGFAPNCSKVVASTCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKYYNLSLHCKRP----GNKTVKQIMLMSGHVFHSHYQPINKRPRQAWCWFKGKWKD
AMQEVKETLAKHPRYRG-TNDTRNISFAAPGKGSDPEVAYMWTNCRGEFLYCNMTWFLNW
IEN---KTHR------------NYAPCHIKQIINTWHKVGRNVYLPPREGELSCNSTVTS
IIANIDWQNN--------NQTNITFSAEVAELYRLELGDYKLVEITPIGFAPTKEKR---
---------
>HIV2_NZ
HC-KQFVTVFYGIPAWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEITLN-V
TEAFDAWNNTVTEQAVEDVWNLFETSIKPCVKLTPLCVAMNCT-----------RNMTTW
TGRTDTQN------ITIINDTSHARADNCTGLKEEEMIDCQFSMTGLERDKRKQYTEAWY
SKDVVCD-NNTSSQSK----------CYMNHCNTSVITESCDKHYWDAMRFRYCAPPGFA
LLRCNDTNYSGFAPNCSKVVAATCTRMMETQTSTWFGFNGTRAENRTYIYWHG-KDNRTI
ISLNNFYNLTMHCKRP----GNKTVLPITFMSGFKFHS-QPVINKKPRQAWCWFEGQWKE
AMQEVKETLAKHPRYKGNRSRTENIKFKAPGRGSDPEVTYMWTNCRGESLYCNMTWFLNW
VENRTGQKQR------------NYAPCRIRQIINTWHRVGKNLYLPPREGELTCNSTVTS
IIANIDA--G--------DQTNITFSAEAAELYRLELGDYKLVEITPIGFAPTSVKR---
---------
>HIV2_CA
YCRQQYVTVFYGVPAWKNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIPLN-V
TEAFDAWDNTITEQAIEDVWNLFETSIKPCVKLTPLCVAMKCN-------ISTSDTTMIR
TTTPSTAK-----EAPISDNSPCIRTNNCSGLEEEKIVKCHFNMTGLERDKKKQYNETWY
SSDVVCDNSTDQTTNET--------TCYMNHCNTSVITESCDKHYWDAMRFRYCAPPGFA
ILRCNDTKYSGFAPNCSKVVASTCTRMMETQTSTWFGFNGTRAENRTYIYWHG-KDNRTI
ISLNKHYNLSMYCRRP----GNKTVVPITLMSGQRFHS-RPIINKRPRQAWCWFKGNWTE
AMQEVKQTLAEHPRYKG-TKNITDITFKAPERGSDPEVTYMWSNCRGEFFYCNMTWFLNW
VENKPNTTKR------------NYAPCHIRQIINTWHKVGKNVYLPPREGELTCNSTVTS
IIANIDERDN--------QTTNITFSADVAELYRLELGDYKLVEITPIGFAPTSQKR---
---------
>SIV_MK
---TQYVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNGDYSELALN-V
TESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSS-TTI
TTAAPTSAPVSEKIDMVNETSSCIAQNNCTGLEQEQMISCKFTMTGLKRDKTKEYNETWY
STDLVCE-QGNSTDNES--------RCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYA
LLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKYYNLTMKCRRP----GNKTVLPVTIMSGLVFHS--QPLTDRPKQAWCWFGGKWKD
AIKEVKQTIVKHPRYTG-TNNTDKINLTAPG-GGDPEVTFMWTNCRGEFLYCKMNWFLNW
VEDRDVTTQRPKERHR-----RNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTS
LIANIDWTDG--------NQTSITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTT
GGTSRNKR-
>SIV_ML
---TQYVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNGDYSELALN-V
TESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSS-TTI
TTAAPTSAPVSEKLDMVNETSSCIAQNNCTGLEQEQMISCKFNMTGLKRDKTKEYNETWY
STDLVCE-QRNSTDNES--------RCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYA
LLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTI
ISLNKYYNLTMKCRRP----GNKTVLPVTIMSELVFHS--QPINDRPKQAWCWFGGKWKD
AIKEVKQTIVKHPRYTG-TNNTDKINLTAPG-GGDPEVTFMWTNCRGEFLYCKMNWFLNW
VEDKDVTTQRPKERHR-----KNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTS
LIANIDWTDG--------NQTSITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTT
GGTSRNKR-
>SIV_M1
---IQYVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNDDYSELALN-V
TESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDKWGLTKSSTTTA
STTTTTTAKSVETRDIVNETSPCVVHDNCTGLEQEPMISCKFNMTGLKRDKKKEYNETWY
SADLVCE-QGNSTGNES--------RCYMNHCNTSVIQECCDKDYWDAIRCRYCAPPGYA
LLRCNDTNYSGFMPNCSKVVVSSCTRMMETQTSTWFRFNGTRAENRTYIYWHG-RDNRTI
ISLNKHYNLTMKCRRP----GNKTVLPVTIMSALVFHS--QPVNERPKQAWCRFGGNWKE
AIKEVKQTIVKHPRYTG-TNNTDKINLTAPR-GGDPEVTFMWTNCRGEFLYCKMNWFLNW
VEDRSLTTQKPKERHK-----RNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTS
LIANINWTDG--------NQTSITMSAEVAELYRLELGDYKLVEITPIGLAPTNVKRYTT
GGTSRNKR-
